ResBaz Perth 2021 - Virtual Data Carpentry Workshop: Data Analysis and Visualisation in python
Curtin University and the University of Western Australia
June 28-29, 2021
9:00 am - 12:30 pm
Philipp Bayer, Valerie Maxville
Andrew Rohl, Leigh Tyers, Dan Marrable, Nancy Tippaya, Ranjodh Singh, Michael Wilson
Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct
research. Its target audience is researchers who have little to no prior computational experience,
and its lessons are domain specific, building on learners' existing knowledge to enable them to quickly
apply skills learned to their own research.
Participants will be encouraged to help one another
and to apply what they have learned to their own research problems.
The course is aimed at graduate students and other researchers from WA Universities. Please register using your University email.
You don't need to have any previous knowledge of the tools
that will be presented at the workshop.
Where: This training will take place online.
The instructors will provide you with the information you will need to connect to this meeting.
Participants must have access to a computer with a
Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on.
They should have a few specific software packages installed (listed below).
We are dedicated to providing a positive and accessible learning environment for all. Please
notify the instructors in advance of the workshop if you require any accommodations or if there is
anything we can do to make this workshop more accessible to you.
If you haven't used WebEx before, go to the
to download and install the WebEx client for your computer.
Set up your workspace
Like other Carpentries workshops,
you will be learning by "coding along" with the Instructors.
To do this, you will need to have both the window for the tool
you will be learning about (a terminal, RStudio, your web browser, etc..)
and the window for the WebEx video conferencing client open.
In order to see both at once,
we recommend using one of the following set up options:
Two monitors: If you have two monitors,
plan to have the tool you are learing up on one monitor and
the video conferencing software on the other.
Two devices: If you don't have two monitors,
do you have another device (tablet, smartphone) with a medium to large
sized screen? If so, try using the smaller device as your video
conference connection and your larger device (laptop or desktop)
to follow along with the tool you will be learning about.
Divide your screen: If you only have one device
and one screen, practice having two windows
(the video conference program and one of the tools you will be using
at the workshop) open together.
How can you best fit both on your screen?
Will it work better for you to toggle between them
using a keyboard shortcut?
Try it out in advance to decide what will work best for you.
This blog post includes detailed information on how to set up your screen to follow along during the workshop.
Python is a popular language for
research computing, and great for general-purpose programming as
well. Installing all of its research packages individually can be
a bit difficult, so we recommend
an all-in-one installer.
Regardless of how you choose to install it,
please make sure you install Python version 3.7 or 3.8
We will teach Python using the Jupyter Notebook,
a programming environment that runs in a web browser (Jupyter Notebook will be installed by Anaconda). For this to work you will need a reasonably
up-to-date browser. The current versions of the Chrome, Safari and
Firefox browsers are all
(some older browsers, including Internet Explorer version 9
and below, are not).
Download the Anaconda for Windows installer with Python 3.8. (If you are not sure which version to choose, you probably want the 64-bit Graphical Installer Anaconda3-...-Windows-x86_64.exe)
Install Python 3 by running the Anaconda Installer, using the recommended settings. Make sure that Register Anaconda as my default Python 3.x option is checked – it should be in the latest version of Anaconda..
Download the Anaconda Installer with Python 3.8 for macOS (you can either use the Graphical or the Command Line Installer).
Download the Anaconda Python 3 installer for macOS. These instructions assume that you use the graphical installer .pkg file.
Follow the Anaconda Python 3 installation instructions. Make sure that the install location is set to “Install only for me” so Anaconda will install its files locally, relative to your home directory.
Installing the software for all users tends to create problems in the long run and should be avoided.
Download the Anaconda Installer with Python 3.8 for Linux.
(The installation requires using the shell. If you aren't
comfortable doing the installation yourself
stop here and request help at the workshop.)
Open a terminal window and navigate to the directory where
the executable is downloaded (e.g., `cd ~/Downloads`).
and then press
Tab to autocomplete the full file name. The name of
file you just downloaded should appear.
You will follow the text-only prompts.
To move through the text, press Spacebar.
Type yes and press enter to approve the license.
Press Enter to approve the default location
for the files.
Type yes and press Enter
to prepend Anaconda to your PATH
(this makes the Anaconda distribution the default Python).